Jean-Marie Rouillard

Centre de Génétique Moléculaire du CNRS; Gif-sur-Yvette, France
Genetics and Molecular Biology ’98

University of Paris XI
M. Sc. Molecular Biology and Genetics ’93
B. Sc. Biochemistry ’85

• J.-M. Rouillard, M.-E. Dufour, B. Theunissen, E. Mandart, G. Dujardin, and F. Lacroute, 1996. sls1, a new Saccharomyces cerevisiae gene, involved in mitochondrial metabolism, isolated as a synthetic lethal in association with an SSM4 deletion. Mol Gen Genet, 252, 700-708.
• J.-M. Rouillard, C. Brendolise and F. Lacroute, 2000. Rna14p, a component of the yeast nuclear Cleavage/Polyadenylation Factor I, is also localised in mitochondria. Mol Gen Genet 262(6):1103-12.
• J.-M. Rouillard, A. Erson, R . Kuick, J. Asakawa, K. Wimmer, M. Muleris, E. Petty and S. Hanash, 2001. Virtual Genome Scan: A Tool for Restriction Landmark Based Scanning of the Human Genome. Genome Research, 11(8):1453-1459.
• J. Oh, F. Brichory, E. Puravs, R. Kuick, C. Wood, J.-M. Rouillard, J. Tra, S. Kardia, D. Beer and S. Hanash, 2001. A database of protein expression in lung cancer. Proteomics, 1, 1303-1319.
• A. Erson, B Niell, S. DeMers, J.-M. Rouillard, S. Hanash and E. Petty, 2001. Characterization of two distinct amplicons on 17q23 and overexpression of TRE2 in breast cancer. Neoplasia, 3(6):521
• S. Hanash, M. Bobek, D. Rickman , T. Williams, J.-M. Rouillard, R. Kuick, E. Puravs, 2002. Integrating cancer genomics and proteomics in the post-genome era. Proteomics. 2(1):69-75.
• M. Ehrlich, K. Buchanan, F. Tsien, G. Jiang, B. Sun, W. Uicker, C. Weemaes, D. Smeets, K. Sperling, B. Belohradsky, D. Misek, J.-M. Rouillard, R. Kuick and S. Hanash, 2001. DNA Methyltransferase 3B Mutations Linked to the ICF Syndrome Cause Dysregulation of Lymphogenesis genes. Human Molecular Genetics, 10(25), 2917-2931.
• K. Wimmer, X.-X. Zhu, J.-M. Rouillard, P. Ambros, B. Lamb, R. Kuick, M. Eckart, A. Weinhausl, C. Fonatsch and S. Hanash, 2002. Combined Restriction Landmark Genomic Scanning and Virtual Genome Scans identify a novel human homeobox gene, Alx3, that is hypermethylated in neuroblastoma. Genes Chromosomes and Cancer, 33(3):285-94.
• J.-M Rouillard, C. Herbert and M. Zuker, 2002. OligoArray: Genome-scale oligonucleotide design for microarrays. Bioinformatics, 18(3):486-7.
• C. Brendolise, J.-M. Rouillard, M.-E.Dufour and F. Lacroute, 2002. Expression analysis of RNA14, a gene involved in mRNA 3′ end maturation in yeast: characterization of the rna14-5 mutant strain. Mol Genet Genomics, 267(4):515-25.
• R. Wu, L. Lin, D. Beer, L. Ellenson, B. Lamb, J.-M. Rouillard, R. Kuick, S. Hanash, D. Schwartz, E. Fearon and K. Cho, 2003. Amplification and Overexpression of the L-MYC Proto-Oncogene in Ovarian Carcinomas. Am J Pathol, 162(5):1603-10.
• J.-M. Rouillard, M. Zuker and E. Gulari, 2003. OligoArray 2.0: design of oligonucleotide probes for DNA microarrays using a thermodynamic approach. Nucleic Acids Res, 31(12):3057-62.
• C. Creighton, R. Kuick, D. Misek, D. Rickman, F. Brichory, J.-M. Rouillard, G. Omenn, S. Hanash, 2003. Profiling of pathway-specific changes in gene expression following growth of human cancer cell lines transplanted into mice. Genome Biol, 4(7):R46.
• J.-M. Rouillard, M. Zuker and E. Gulari, 2003. OligoArray 2.0: design of oligonucleotide probes for DNA microarrays using a thermodynamic approach. Nucleic Acids Res, 31(12):3057-62.
• A. Zatkova, J-M Rouillard, W. Hartmann, B. Lamb, R. Kuick, M. Eckart, D. Von Schweinitz, A. Koch, C. Fonatsch, T. Pietsch, S. Hanash, and K Wimmer, 2004. Amplification and Overexpression of the IGF2 Regulator PLAG1 in Hepatoblastoma. Genes, Chromosomes and Cancer, 39(2):126-37.
• A. Zatkova, R. Ullmann, J.-M. Rouillard, B. Lamb, R. Kuick, S. Hanash, S. Schnittger, C. Schoch, C. Fonatsch and K. Wimmer, 2004. Distinct sequences on 11q13.5 and 11q23-24 are frequently coamplified with MLL in complexly organized 11q amplicons in AML/MDS patients. Genes Chromosomes Cancer, 39(4):263-76.
• J.-M. Rouillard, W. Lee, G. Truan, X. Gao, X. Zhou, E. Gulari, 2004. Gene2Oligo: Oligonucleotide design for in vitro gene synthesis. Nucleic Acids Res, 32:W176-80.
• V. Denef, J. Park, T. Tsoi, J.-M. Rouillard, H. Zhang, J. Wibbenmeyer, W. Verstraete, E. Gulari, S. Hashsham, J. Tiedje, 2004. Biphenyl and benzonate metabolism in a genomic context: outlining genome-wide metabolic networks in Burkholderia xenovorans LB400. Appl Environ Microbiol, 70(8):4961-70.
• X. Zhou, S. Cai, A. Hong, Q. You, P. Yu, N. Sheng, O. Srivannavit, S. Muranjan, J.-M. Rouillard, Y Xia, X. Zhang, Q. Xiang, R. Ganesh, Q. Zhu, A. Matejko, E. Gulari, X. Gao, 2004. Microfluidic PicoArray synthesis of oligodeoxynucleotides and simultaneous assembling of multiple DNA sequences. Nucleic Acids Res, 32(18):5409-17.
• S. Hashsham, L. Wick, J.-M. Rouillard, E. Gulari, J. Tiedje, 2004. Potential of DNA microarrays for developing parallel detection tools (PDTs) for microorganisms relevant to biodefense and related research needs. Biosensors and Bioelectronics, 20(4):668-83.
• P. Podsiadlo, S. Paternel, J.-M. Rouillard, Z. Zhang, J. Lee, JW. Lee, E. Gulari, N. Kotov, 2005. Layer-by-layer assembly of nacre-like nanostructured composites with antimicrobial properties. Langmuir, 21(25):11915-21.
• L. Wick, J.-M. Rouillard, T. Whittam, E. Gulari, J. Tiedje, S. Hashsham, 2006. On-chip non-equilibrium dissociation curves and dissociation rate constants as methods to assess specificity of oligonucleotide probes. Nucleic Acids Res., 34(3):e26.
• K. Le Brigand, R. Russell, C. Moreilhon, J.-M. Rouillard, B. Jost, F. Amiot, V. Magnone, C. Bole-Feysot, P. Rostagno, V. Virolle, V. Defamie, P. Dessen, G. Williams, P. Lyons, G. Rios, B. Mari, E. Gulari, P. Kastner, X. Gidrol, T.C. Freeman and P. Barbry, 2006. An open-access long oligonucleotide microarray resource for analysis of the human and mouse transcriptomes. Nucleic Acids Res., 34(12):e87.
• R. Stedtfeld, L. Wick, SW Baushke, D. Tourlousse, A. Herzog, Y. Xia, J.-M. Rouillard, J. Klappenbach, J. Cole, E. Gulari, J. Tiedje, S. Hashsham, 2006. Influence of Dangling End and Surface Proximal Tail of Targets on Probe-Target Duplex Formation in 16S rRNA Gene-Based Diagnostic Arrays. Appl Environ Microbiol. 2006 Nov 17; [Epub ahead of print]